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Platr28 Gene Detail
Summary
  • Symbol
    Platr28
  • Name
    pluripotency associated transcript 28
  • Synonyms
    EG434225, Gm15514
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3645719
    NCBI Gene: 434225
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr7:106842229-106899603 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 56.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1108 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645719
 lncRNA gene Chr7:106842229-106899603 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007247
 lincRNA gene Chr7:110589340-110640448 (+)
A/J MGP_AJ_G0007244
 lincRNA gene Chr7:107837981-107885134 (+)
AKR/J MGP_AKRJ_G0007214
 lincRNA gene Chr7:110546011-110597466 (+)
BALB/cJ MGP_BALBcJ_G0007222
 lincRNA gene Chr7:107543524-107591056 (+)
C3H/HeJ MGP_C3HHeJ_G0007166
 lincRNA gene Chr7:110559451-110611717 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007392
 lincRNA gene Chr7:115148055-115213157 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006598
 lincRNA gene Chr7:109542789-109558487 (+)
CAST/EiJ MGP_CASTEiJ_G0007068
 lincRNA gene Chr7:102164030-102216232 (+)
CBA/J MGP_CBAJ_G0007149
 lincRNA gene Chr7:118941446-118999401 (+)
DBA/2J MGP_DBA2J_G0007170
 lincRNA gene Chr7:105970928-106020472 (+)
FVB/NJ MGP_FVBNJ_G0007192
 lincRNA gene Chr7:105812153-105860300 (+)
LP/J MGP_LPJ_G0007252
 lincRNA gene Chr7:112176813-112226704 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007169
 lincRNA gene Chr7:120611089-120626402 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007395
 lincRNA gene Chr7:109604163-109659734 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0006919
 lincRNA gene Chr7:96209898-96260423 (+)
WSB/EiJ MGP_WSBEiJ_G0007129
 lincRNA gene Chr7:110344405-110395658 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
  • All Mutations and Alleles
    39
  • Chemically induced (other)
    1
  • Gene trapped
    37
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Platr28
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000057215 Ensembl Gene Model | MGI Sequence Detail 57375 C57BL/6J ±  kb
transcript ENSMUST00000133824 Ensembl | MGI Sequence Detail 1294 Not Applicable  
polypeptide Q6R5G5 UniProt | EBI | MGI Sequence Detail 57 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 22
    Gene Ontology 1
    Phenotypes 14
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory