Gm5893 Gene Detail

Summary

• Symbol
  Gm5893
• Name
  predicted gene 5893

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3645761
  NCBI Gene: 545936
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:24518220-24539700 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 13.02 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  702 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645761	lncRNA gene	Chr7:24518220-24539700 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015656	unclassified non-coding RNA gene	Chr7:23222185-23245536 (+)
A/J	MGP_AJ_G0015633	unclassified non-coding RNA gene	Chr7:22654840-22678113 (+)
AKR/J	MGP_AKRJ_G0015596	unclassified non-coding RNA gene	Chr7:23179954-23203527 (+)
BALB/cJ	MGP_BALBcJ_G0015595	unclassified non-coding RNA gene	Chr7:22856855-22880883 (+)
C3H/HeJ	MGP_C3HHeJ_G0015416	unclassified non-coding RNA gene	Chr7:23592459-23617312 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016048	unclassified non-coding RNA gene	Chr7:23991808-24016778 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013781	unclassified non-coding RNA gene	Chr7:24091535-24113264 (+)
CAST/EiJ	MGP_CASTEiJ_G0014973	unclassified non-coding RNA gene	Chr7:17076485-17097071 (+)
CBA/J	MGP_CBAJ_G0015397	unclassified non-coding RNA gene	Chr7:24868453-24896240 (+)
DBA/2J	MGP_DBA2J_G0015492	unclassified non-coding RNA gene	Chr7:22562820-22583159 (+)
FVB/NJ	MGP_FVBNJ_G0015499	unclassified non-coding RNA gene	Chr7:22533769-22557902 (+)
LP/J	MGP_LPJ_G0015572	unclassified non-coding RNA gene	Chr7:23539075-23558954 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015521	unclassified non-coding RNA gene	Chr7:24613661-24638677 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016090	unclassified non-coding RNA gene	Chr7:22886734-22908306 (+)
PWK/PhJ	MGP_PWKPhJ_G0014755	unclassified non-coding RNA gene	Chr7:17485803-17508140 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014544	unclassified non-coding RNA gene	Chr7:14196552-14216992 (+)
WSB/EiJ	MGP_WSBEiJ_G0015077	unclassified non-coding RNA gene	Chr7:23041573-23065318 (+)

Homology

• Gene Tree
  Gm5893
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000011350 (Evidence)
• NCBI Gene
  545936

Representative Sequences			Length	Strain/Species
genomic	545936	NCBI Gene Model | MGI Sequence Detail	21481	C57BL/6J
transcript	NR_045096	RefSeq | MGI Sequence Detail	1906	Not Specified
polypeptide	A0AAA9WW42	UniProt | EBI | MGI Sequence Detail	471	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR050831 Carcinoembryonic antigen-related cell adhesion
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR003599 Immunoglobulin subtype
  IPR003598 Immunoglobulin subtype 2
  IPR013106 Immunoglobulin V-set domain

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm5893:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65042	Chr7:24518178-24518189 (+)	-36 bp
Tssr65043	Chr7:24518191-24518198 (+)	-25 bp
Tssr65044	Chr7:24518214-24518220 (+)	-3 bp
Tssr65045	Chr7:24524174-24524201 (+)	5,968 bp