Gm4994 Pseudogene Detail

Summary

• Symbol
  Gm4994
• Name
  predicted gene 4994

• Feature Type
  pseudogene
• IDs
  MGI:3645787
  NCBI Gene: 245600
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:130748636-130750822 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 53.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645787	pseudogene	ChrX:130748517-130751226 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014816	pseudogene	ChrX:128960011-128962717 (-)
A/J	MGP_AJ_G0014813	pseudogene	ChrX:128395519-128397722 (-)
AKR/J	MGP_AKRJ_G0014749	pseudogene	ChrX:132509364-132511476 (-)
BALB/cJ	MGP_BALBcJ_G0014766	pseudogene	ChrX:126862273-126865173 (-)
C3H/HeJ	MGP_C3HHeJ_G0014597	pseudogene	ChrX:129031478-129033617 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015252	pseudogene	ChrX:132727109-132729319 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012905	pseudogene	ChrX:120711455-120713731 (-)
CAST/EiJ	MGP_CASTEiJ_G0014216	pseudogene	ChrX:110019958-110022167 (-)
CBA/J	MGP_CBAJ_G0014590	pseudogene	ChrX:136642310-136644436 (-)
DBA/2J	MGP_DBA2J_G0014676	pseudogene	ChrX:127743855-127747188 (-)
FVB/NJ	MGP_FVBNJ_G0014654	pseudogene	ChrX:127058488-127060586 (-)
LP/J	MGP_LPJ_G0014770	pseudogene	ChrX:129813485-129815480 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014702	pseudogene	ChrX:143822018-143824599 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015227	pseudogene	ChrX:128377182-128379385 (-)
PWK/PhJ	MGP_PWKPhJ_G0014018	pseudogene	ChrX:106954332-106956521 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013810	pseudogene	ChrX:110558700-110560910 (-)
WSB/EiJ	MGP_WSBEiJ_G0014297	pseudogene	ChrX:126834214-126839479 (-)

Homology

• Gene Tree
  Gm4994
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082117 (Evidence)
• NCBI Gene
  245600

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082117	Ensembl Gene Model | MGI Sequence Detail	2187	C57BL/6J
transcript	ENSMUST00000118379	Ensembl | MGI Sequence Detail	2187	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4994:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164112	ChrX:130751215-130751249 (-)	-410 bp