Gm5715 Pseudogene Detail

Summary

• Symbol
  Gm5715
• Name
  predicted gene 5715

• Feature Type
  pseudogene
• IDs
  MGI:3645858
  NCBI Gene: 435832
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:10166550-10168014 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 3.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645858	pseudogene	Chr5:10166550-10168652 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012967	pseudogene	Chr5:7183005-7184469 (+)
A/J	MGP_AJ_G0012954	pseudogene	Chr5:6967249-6968713 (+)
AKR/J	MGP_AKRJ_G0012921	pseudogene	Chr5:7154677-7156139 (+)
BALB/cJ	MGP_BALBcJ_G0012933	pseudogene	Chr5:7160124-7161588 (+)
C3H/HeJ	MGP_C3HHeJ_G0012784	pseudogene	Chr5:7304829-7306293 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013293	pseudogene	Chr5:7808204-7809668 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011501	pseudogene	Chr5:6607519-6608986 (+)
CAST/EiJ	MGP_CASTEiJ_G0012522	pseudogene	Chr5:7151711-7153173 (+)
CBA/J	MGP_CBAJ_G0012755	pseudogene	Chr5:7931670-7933134 (+)
DBA/2J	MGP_DBA2J_G0012829	pseudogene	Chr5:7069332-7070796 (+)
FVB/NJ	MGP_FVBNJ_G0012832	pseudogene	Chr5:6833528-6834992 (+)
LP/J	MGP_LPJ_G0012900	pseudogene	Chr5:7354326-7355790 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012845	pseudogene	Chr5:8044007-8045471 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013292	pseudogene	Chr5:7086062-7087526 (+)
PWK/PhJ	MGP_PWKPhJ_G0012339	pseudogene	Chr5:6838161-6839613 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012152	pseudogene	Chr5:7297290-7298754 (+)
WSB/EiJ	MGP_WSBEiJ_G0012556	pseudogene	Chr5:7098890-7100354 (+)

Homology

• Gene Tree
  Gm5715
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105173 (Evidence)
• NCBI Gene
  435832

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105173	Ensembl Gene Model | MGI Sequence Detail	1465	C57BL/6J
transcript	ENSMUST00000196854	Ensembl | MGI Sequence Detail	1465	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;