Gm6166 Pseudogene Detail

Summary

• Symbol
  Gm6166
• Name
  predicted gene 6166

• Feature Type
  pseudogene
• IDs
  MGI:3645893
  NCBI Gene: 101056162
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:57391246-57391654 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 31.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645893	pseudogene	Chr9:57391197-57391874 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036425	pseudogene	Chr18:74923089-74923653 (-)
A/J	MGP_AJ_G0036409	pseudogene	Chr18:71664083-71664647 (-)
AKR/J	MGP_AKRJ_G0036360	pseudogene	Chr18:73779103-73779667 (-)
BALB/cJ	MGP_BALBcJ_G0036401	pseudogene	Chr18:71842386-71842950 (-)
C3H/HeJ	MGP_C3HHeJ_G0036093	pseudogene	Chr18:73872436-73873000 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036980	pseudogene	Chr9:58277170-58277723 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0036240	pseudogene	Chr18:71267188-71267752 (-)
FVB/NJ	MGP_FVBNJ_G0036196	pseudogene	Chr18:70605313-70605877 (-)
LP/J	MGP_LPJ_G0036294	pseudogene	Chr18:74799246-74799810 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036197	pseudogene	Chr18:80971914-80972478 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6166
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000074280 (Evidence)
• NCBI Gene
  101056162

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074280	Ensembl Gene Model | MGI Sequence Detail	409	C57BL/6J
transcript	ENSMUST00000098689	Ensembl | MGI Sequence Detail	409	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6166:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85302	Chr9:57391191-57391200 (+)	-50 bp