Gm16399 Pseudogene Detail

Summary

• Symbol
  Gm16399
• Name
  predicted pseudogene 16399

• Feature Type
  pseudogene
• IDs
  MGI:3645963
  NCBI Gene: 100041785
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:14867416-14867634 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 3.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645963	pseudogene	Chr3:14867275-14867692 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012041	pseudogene	Chr3:11944857-11945075 (-)
A/J	MGP_AJ_G0012032	pseudogene	Chr3:11903563-11903781 (-)
AKR/J	MGP_AKRJ_G0011993	pseudogene	Chr3:11896661-11896879 (-)
BALB/cJ	MGP_BALBcJ_G0012009	pseudogene	Chr3:11674763-11674981 (-)
C3H/HeJ	MGP_C3HHeJ_G0011887	pseudogene	Chr3:12219256-12219474 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012314	pseudogene	Chr3:12749529-12749747 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011668	pseudogene	Chr3:12241983-12242201 (-)
CBA/J	MGP_CBAJ_G0011860	pseudogene	Chr3:12967088-12967306 (-)
DBA/2J	MGP_DBA2J_G0011912	pseudogene	Chr3:11483529-11483747 (-)
FVB/NJ	MGP_FVBNJ_G0011922	pseudogene	Chr3:11305417-11305635 (-)
LP/J	MGP_LPJ_G0011989	pseudogene	Chr3:12545422-12545640 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011923	pseudogene	Chr3:14719385-14719603 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012321	pseudogene	Chr3:11705308-11705526 (-)
PWK/PhJ	MGP_PWKPhJ_G0011516	pseudogene	Chr3:11580392-11580610 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011331	pseudogene	Chr3:11739079-11739297 (-)
WSB/EiJ	MGP_WSBEiJ_G0011691	pseudogene	Chr3:11783225-11783443 (-)

Homology

• Gene Tree
  Gm16399
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000097790 (Evidence)
• NCBI Gene
  100041785

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097790	Ensembl Gene Model | MGI Sequence Detail	219	C57BL/6J
transcript	ENSMUST00000181423	Ensembl | MGI Sequence Detail	219	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm16399:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32647	Chr3:14867663-14867697 (-)	-46 bp