Supt20-ps Pseudogene Detail

Summary

• Symbol
  Supt20-ps
• Name
  SPT20 SAGA complex component, pseudogene
• Synonyms
  EG668103, Fam48b1

• Feature Type
  pseudogene
• IDs
  MGI:3645971
  NCBI Gene: 668103
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:92964773-92965547 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 41.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645971	pseudogene	ChrX:92963901-92965568 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014612	pseudogene	ChrX:90293224-90296749 (-)
A/J	MGP_AJ_G0014621	pseudogene	ChrX:90389831-90391498 (-)
AKR/J	MGP_AKRJ_G0014545	pseudogene	ChrX:92768126-92769793 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0014406	pseudogene	ChrX:90661596-90663119 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015052	pseudogene	ChrX:93056262-93059800 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012760	pseudogene	ChrX:88564432-88566099 (-)
CAST/EiJ	MGP_CASTEiJ_G0014032	pseudogene	ChrX:75321837-75323504 (-)
CBA/J	MGP_CBAJ_G0014393	pseudogene	ChrX:95745004-95746641 (-)
DBA/2J	MGP_DBA2J_G0014474	pseudogene	ChrX:89640571-89642074 (-)
FVB/NJ	MGP_FVBNJ_G0014461	pseudogene	ChrX:89030305-89031825 (-)
LP/J	MGP_LPJ_G0014572	pseudogene	ChrX:91083347-91085364 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0015019	pseudogene	ChrX:90016918-90018709 (-)
PWK/PhJ	MGP_PWKPhJ_G0013838	pseudogene	ChrX:73118453-73120823 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013631	pseudogene	ChrX:76187367-76189034 (-)
WSB/EiJ	MGP_WSBEiJ_G0014109	pseudogene	ChrX:88814687-88816578 (-)

Homology

• Gene Tree
  Supt20-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000082728 (Evidence)
• NCBI Gene
  668103

Representative Sequences			Length	Strain/Species
genomic	668103	NCBI Gene Model | MGI Sequence Detail	775	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Supt20-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163771	ChrX:92966613-92966618 (-)	-1,069 bp