Gm5944 Pseudogene Detail

Summary

• Symbol
  Gm5944
• Name
  predicted gene 5944

• Feature Type
  pseudogene
• IDs
  MGI:3646005
  NCBI Gene: 546363
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:114368591-114369591 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 49.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646005	pseudogene	ChrX:114368389-114369609 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014759	pseudogene	ChrX:112248146-112249068 (-)
A/J	MGP_AJ_G0014763	pseudogene	ChrX:111992488-111993535 (-)
AKR/J	MGP_AKRJ_G0014696	pseudogene	ChrX:115497227-115498113 (-)
BALB/cJ	MGP_BALBcJ_G0014714	pseudogene	ChrX:110520172-110521954 (-)
C3H/HeJ	MGP_C3HHeJ_G0014545	pseudogene	ChrX:112605212-112606749 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014164	pseudogene	ChrX:96399796-96400784 (-)
CBA/J	MGP_CBAJ_G0014538	pseudogene	ChrX:119146684-119147787 (-)
DBA/2J	MGP_DBA2J_G0014622	pseudogene	ChrX:111222401-111224254 (-)
FVB/NJ	MGP_FVBNJ_G0014601	pseudogene	ChrX:110634026-110635514 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014649	pseudogene	ChrX:124820065-124821267 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015168	pseudogene	ChrX:111763700-111764627 (-)
PWK/PhJ	MGP_PWKPhJ_G0013967	pseudogene	ChrX:93819878-93820889 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013761	pseudogene	ChrX:97191743-97192698 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5944
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000081034 (Evidence)
• NCBI Gene
  546363

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081034	Ensembl Gene Model | MGI Sequence Detail	1001	C57BL/6J
transcript	ENSMUST00000118182	Ensembl | MGI Sequence Detail	1001	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;