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Cntnap5c Gene Detail
Summary
  • Symbol
    Cntnap5c
  • Name
    contactin associated protein-like 5C
  • Feature Type
    protein coding gene
  • IDs
    MGI:3646013
    NCBI Gene: 620292
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:58076565-58717350 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 30.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    22256 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646013
 protein coding gene Chr17:58076070-58724948 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023966
 protein coding gene Chr17:59511158-60176464 (+)
A/J MGP_AJ_G0023924
 protein coding gene Chr17:57875356-58491975 (+)
AKR/J MGP_AKRJ_G0023893
 protein coding gene Chr17:58622568-59271247 (+)
BALB/cJ MGP_BALBcJ_G0023925
 protein coding gene Chr17:57716679-58369513 (+)
C3H/HeJ MGP_C3HHeJ_G0023689
 protein coding gene Chr17:59346391-59999489 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024371
 protein coding gene Chr17:61835221-62516140 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021817
 protein coding gene Chr17:54377026-54955631 (+)
CAST/EiJ MGP_CASTEiJ_G0023171
 protein coding gene Chr17:59626855-60269182 (+)
CBA/J MGP_CBAJ_G0023665
 protein coding gene Chr17:64286413-64990962 (+)
DBA/2J MGP_DBA2J_G0023793
 protein coding gene Chr17:56557254-57202658 (+)
FVB/NJ MGP_FVBNJ_G0023759
 protein coding gene Chr17:56146467-56785417 (+)
LP/J MGP_LPJ_G0023875
 protein coding gene Chr17:60194468-60857357 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023787
 protein coding gene Chr17:63673078-64365612 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024415
 protein coding gene Chr17:58982031-59639028 (+)
PWK/PhJ MGP_PWKPhJ_G0022917
 protein coding gene Chr17:55900025-56525976 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022728
 protein coding gene Chr17:55714528-56339154 (+)
WSB/EiJ MGP_WSBEiJ_G0023237
 protein coding gene Chr17:59579500-60214105 (+)



Homology
more
  • Human Ortholog
    CNTNAP5, contactin associated protein family member 5
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CNTNAP5, contactin associated protein family member 5
  • Synonyms
    caspr5
  • Links
    NCBI Gene ID: 129684
    neXtProt AC: NX_Q8WYK1
    UniProt: Q8WYK1

  • Chr Location
    2q14.3; chr2:124025287-124921219 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    4
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038048 Ensembl Gene Model | MGI Sequence Detail 640786 C57BL/6J ±  kb
transcript ENSMUST00000076038 Ensembl | MGI Sequence Detail 3931 Not Applicable  
polypeptide ENSMUSP00000075416 Ensembl | MGI Sequence Detail 1305 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000006197 contactin-associated protein like 5-3
    (term hierarchy)
  • InterPro Domains
    IPR000421 Coagulation factor 5/8 C-terminal domain
    IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    IPR000742 EGF-like domain
    IPR002181 Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
    IPR036056 Fibrinogen-like, C-terminal
    IPR008979 Galactose-binding-like domain superfamily
    IPR001791 Laminin G domain
    IPR050372 Neurexin-related cell adhesion and synaptic protein
  • GlyGen
    Q0V8T7 6 sites, 6 N-linked glycans (3 sites)
Molecular
Reagents
less
  • All nucleic 3
    Primer pair 1
    Other 2

    Microarray probesets 2
References
more
  • Summaries
    All 15
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:110610 Traut W, et al., New members of the neurexin superfamily: multiple rodent homologues of the human CASPR5 gene. Mamm Genome. 2006 Jul;17(7):723-31
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory