Gm5394 Pseudogene Detail

Summary

• Symbol
  Gm5394
• Name
  predicted gene 5394

• Feature Type
  pseudogene
• IDs
  MGI:3646155
  NCBI Gene: 385419
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:120086708-120087679 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 49.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646155	pseudogene	ChrX:120086705-120087679 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014788	pseudogene	ChrX:118074430-118075404 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0015224	pseudogene	ChrX:121613001-121613975 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014191	pseudogene	ChrX:102063491-102064465 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0014742	pseudogene	ChrX:118968351-118969325 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0015197	pseudogene	ChrX:117601164-117602138 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5394
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000080695 (Evidence)
• NCBI Gene
  385419

Representative Sequences			Length	Strain/Species
genomic	385419	NCBI Gene Model | MGI Sequence Detail	972	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;