Rpl23a-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl23a-ps1
• Name
  ribosomal protein 23A, pseudogene 1
• Synonyms
  Gm4851

• Feature Type
  pseudogene
• IDs
  MGI:3646201
  NCBI Gene: 227054
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:46020708-46021172 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646201	pseudogene	Chr1:46020691-46021227 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010110	pseudogene	Chr1:45063480-45063944 (+)
A/J	MGP_AJ_G0010097	pseudogene	Chr1:43660850-43661314 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010085	pseudogene	Chr1:43292013-43292477 (+)
C3H/HeJ	MGP_C3HHeJ_G0010015	pseudogene	Chr1:44709103-44709567 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010335	pseudogene	Chr1:46945720-46946184 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0009985	pseudogene	Chr1:48279382-48279846 (+)
DBA/2J	MGP_DBA2J_G0010010	pseudogene	Chr1:42944331-42944795 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010101	pseudogene	Chr1:45362472-45362936 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0010313	pseudogene	Chr1:44512353-44512817 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl23a-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl23a-ps1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000070896 (Evidence)
• NCBI Gene
  227054

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070896	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000085632	Ensembl | MGI Sequence Detail	465	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;