Gm6797 Pseudogene Detail

Summary

• Symbol
  Gm6797
• Name
  predicted pseudogene 6797

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646261
  NCBI Gene: 387284
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:8505861-8511512 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 3.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  265 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646261	pseudogene	ChrX:8505846-8511961 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0040294	pseudogene	ChrX:3114334-3402251 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040395	pseudogene	ChrX:2974123-2981235 (+)
LP/J	MGP_LPJ_G0040512	pseudogene	ChrX:3259728-3425419 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040398	pseudogene	ChrX:3279514-3518243 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038991	pseudogene	ChrX:3009534-3085397 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038704	pseudogene	ChrX:3436314-3442199 (+)
WSB/EiJ	MGP_WSBEiJ_G0039586	pseudogene	ChrX:3312185-3541857 (+)

Homology

• Gene Tree
  Gm6797
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  2

• Ensembl
  ENSMUSG00000081410 (Evidence)
• NCBI Gene
  387284

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081410	Ensembl Gene Model | MGI Sequence Detail	5652	C57BL/6J
transcript	ENSMUST00000119440	Ensembl | MGI Sequence Detail	512	Not Applicable
polypeptide	XP_017174170	RefSeq | MGI Sequence Detail	175	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;