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Tmem200c Gene Detail
Summary
  • Symbol
    Tmem200c
  • Name
    transmembrane protein 200C
  • Synonyms
    Gm6338
  • Feature Type
    protein coding gene
  • IDs
    MGI:3646281
    NCBI Gene: 622645
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:69144084-69150133 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 39.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    183 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646281
 protein coding gene Chr17:69133618-69150134 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023995
 protein coding gene Chr17:71146327-71152343 (+)
A/J MGP_AJ_G0023953
 protein coding gene Chr17:69002074-69008082 (+)
AKR/J MGP_AKRJ_G0023922
 protein coding gene Chr17:69982595-69988606 (+)
BALB/cJ MGP_BALBcJ_G0023954
 protein coding gene Chr17:68942437-68948478 (+)
C3H/HeJ MGP_C3HHeJ_G0023718
 protein coding gene Chr17:70894298-70900318 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024400
 protein coding gene Chr17:73722407-73728461 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021846
 protein coding gene Chr17:64901046-64907031 (+)
CAST/EiJ MGP_CASTEiJ_G0023200
 protein coding gene Chr17:71284590-71291698 (+)
CBA/J MGP_CBAJ_G0023694
 protein coding gene Chr17:76790650-76798183 (+)
DBA/2J MGP_DBA2J_G0023822
 protein coding gene Chr17:67699868-67706813 (+)
FVB/NJ MGP_FVBNJ_G0023788
 protein coding gene Chr17:67185487-67191503 (+)
LP/J MGP_LPJ_G0023904
 protein coding gene Chr17:71888788-71894804 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023816
 protein coding gene Chr17:76759981-76766792 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024444
 protein coding gene Chr17:70465371-70472244 (+)
PWK/PhJ MGP_PWKPhJ_G0022946
 protein coding gene Chr17:67039783-67045795 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022757
 protein coding gene Chr17:67184327-67190327 (+)
WSB/EiJ MGP_WSBEiJ_G0023266
 protein coding gene Chr17:71216004-71223640 (+)



Homology
more
  • Human Ortholog
    TMEM200C, transmembrane protein 200C
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMEM200C, transmembrane protein 200C
  • Synonyms
    TTMA
  • Links
    NCBI Gene ID: 645369
    neXtProt AC: NX_A6NKL6
    UniProt: A6NKL6

  • Chr Location
    18p11.31; chr18:5882072-5896174 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 622645 NCBI Gene Model | MGI Sequence Detail 6050 C57BL/6J ±  kb
transcript NM_001206661 RefSeq | MGI Sequence Detail 3260 C57BL/6  
polypeptide NP_001193590 RefSeq | MGI Sequence Detail 637 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR018787 Protein of unknown function DUF2371, TMEM200
  • GlyGen
    J3QK46 2 sites, 2 N-linked glycans (2 sites)
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Phenotypes 2
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:293217 GemPharmatech, GemPharmatech Website. 2020;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory