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Gm6598 Gene Detail
Summary
  • Symbol
    Gm6598
  • Name
    predicted gene 6598
  • Synonyms
    Gm42469
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3646314
    NCBI Gene: 625540
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:130250559-130252707 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    138 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646314
 lncRNA gene Chr5:130249292-130252707 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004189
 antisense lncRNA gene Chr5:134340600-134343214 (-)
A/J MGP_AJ_G0004168
 antisense lncRNA gene Chr5:128677281-128679897 (-)
AKR/J MGP_AKRJ_G0004149
 antisense lncRNA gene Chr5:132851035-132853649 (-)
BALB/cJ MGP_BALBcJ_G0004154
 antisense lncRNA gene Chr5:130034868-130037483 (-)
C3H/HeJ MGP_C3HHeJ_G0004102
 antisense lncRNA gene Chr5:133420688-133423302 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004302
 antisense lncRNA gene Chr5:139488720-139491334 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003779
 antisense lncRNA gene Chr5:123057408-123060076 (-)
CAST/EiJ MGP_CASTEiJ_G0004064
 antisense lncRNA gene Chr5:132740897-132743491 (-)
CBA/J MGP_CBAJ_G0004096
 antisense lncRNA gene Chr5:144921504-144924118 (-)
DBA/2J MGP_DBA2J_G0004112
 antisense lncRNA gene Chr5:128642509-128645123 (-)
FVB/NJ MGP_FVBNJ_G0004128
 antisense lncRNA gene Chr5:127734419-127737033 (-)
LP/J MGP_LPJ_G0004190
 antisense lncRNA gene Chr5:134858541-134861155 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004118
 antisense lncRNA gene Chr5:148257999-148260613 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004300
 antisense lncRNA gene Chr5:132552609-132555223 (-)
PWK/PhJ MGP_PWKPhJ_G0004018
 antisense lncRNA gene Chr5:127583052-127585688 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003961
 antisense lncRNA gene Chr5:130130532-130133129 (-)
WSB/EiJ MGP_WSBEiJ_G0004100
 antisense lncRNA gene Chr5:133262776-133265390 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm6598
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 625540 NCBI Gene Model | MGI Sequence Detail 2149 C57BL/6J ±  kb
transcript AK080981 GenBank | ENA | DDBJ | MGI Sequence Detail 2651 C57BL/6J  
polypeptide Q8C4V2 UniProt | EBI | MGI Sequence Detail 154 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:5662606
References
more
  • Summaries
    All 15
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory