Gm5398 Pseudogene Detail

Summary

• Symbol
  Gm5398
• Name
  predicted gene 5398

• Feature Type
  pseudogene
• IDs
  MGI:3646383
  NCBI Gene: 385474
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:76333438-76334421 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646383	pseudogene	ChrX:76333230-76334462 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014534	pseudogene	ChrX:73108468-73109520 (-)
A/J	MGP_AJ_G0014544	pseudogene	ChrX:73377705-73378689 (-)
AKR/J	MGP_AKRJ_G0014470	pseudogene	ChrX:75296572-75297544 (-)
BALB/cJ	MGP_BALBcJ_G0014497	pseudogene	ChrX:72344846-72346160 (-)
C3H/HeJ	MGP_C3HHeJ_G0014330	pseudogene	ChrX:73606038-73607021 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014973	pseudogene	ChrX:75464929-75465912 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012711	pseudogene	ChrX:72715219-72716216 (-)
CAST/EiJ	MGP_CASTEiJ_G0013960	pseudogene	ChrX:58880745-58881719 (-)
CBA/J	MGP_CBAJ_G0014315	pseudogene	ChrX:77448954-77449939 (-)
DBA/2J	MGP_DBA2J_G0014397	pseudogene	ChrX:72809263-72810241 (-)
FVB/NJ	MGP_FVBNJ_G0014386	pseudogene	ChrX:72089462-72090440 (-)
LP/J	MGP_LPJ_G0014492	pseudogene	ChrX:73996634-73997610 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014428	pseudogene	ChrX:80173679-80174659 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014939	pseudogene	ChrX:72970720-72971695 (-)
PWK/PhJ	MGP_PWKPhJ_G0013764	pseudogene	ChrX:56954427-56955402 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013565	pseudogene	ChrX:59712808-59713781 (-)
WSB/EiJ	MGP_WSBEiJ_G0014035	pseudogene	ChrX:72174893-72175871 (-)

Homology

• Gene Tree
  Gm5398
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084202 (Evidence)
• NCBI Gene
  385474

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084202	Ensembl Gene Model | MGI Sequence Detail	984	C57BL/6J
transcript	ENSMUST00000121933	Ensembl | MGI Sequence Detail	984	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;