Gm6788 Pseudogene Detail

Summary

• Symbol
  Gm6788
• Name
  predicted gene 6788

• Feature Type
  pseudogene
• IDs
  MGI:3646480
  NCBI Gene: 627788
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:28740561-28740830 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 23.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646480	pseudogene	Chr19:28740265-28740939 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011487	pseudogene	Chr19:27185661-27185930 (-)
A/J	MGP_AJ_G0011485	pseudogene	Chr19:25804451-25804720 (-)
AKR/J	MGP_AKRJ_G0011450	pseudogene	Chr19:26745379-26745648 (-)
BALB/cJ	MGP_BALBcJ_G0011465	pseudogene	Chr19:25855587-25855856 (-)
C3H/HeJ	MGP_C3HHeJ_G0011353	pseudogene	Chr19:26714661-26714930 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011756	pseudogene	Chr19:27940301-27940570 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012406	pseudogene	Chr9:66619993-66620249 (-)
CAST/EiJ	MGP_CASTEiJ_G0011150	pseudogene	Chr19:26540862-26541131 (-)
CBA/J	MGP_CBAJ_G0011322	pseudogene	Chr19:29257552-29257821 (-)
DBA/2J	MGP_DBA2J_G0011378	pseudogene	Chr19:25769280-25769549 (-)
FVB/NJ	MGP_FVBNJ_G0011384	pseudogene	Chr19:25616933-25617202 (-)
LP/J	MGP_LPJ_G0011446	pseudogene	Chr19:27178353-27178622 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011380	pseudogene	Chr19:29192058-29192327 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011744	pseudogene	Chr19:26767204-26767473 (-)
PWK/PhJ	MGP_PWKPhJ_G0011007	pseudogene	Chr19:25427981-25428301 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013215	pseudogene	Chr9:69075703-69078585 (-)
WSB/EiJ	MGP_WSBEiJ_G0011178	pseudogene	Chr19:26798446-26798715 (-)

Homology

• Gene Tree
  Gm6788
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1
• CCDS
  CCDS50412.1

• Ensembl
  ENSMUSG00000090737 (Evidence)
• NCBI Gene
  627788

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090737	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00000166459	Ensembl | MGI Sequence Detail	270	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;

TSS for Gm6788:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158734	Chr19:28740937-28740940 (-)	-109 bp