Gm6787 Gene Detail

Summary

• Symbol
  Gm6787
• Name
  predicted gene 6787

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3646481
  NCBI Gene: 627782
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:7963326-7972940 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 3.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  247 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646481	lncRNA gene	ChrX:7963326-7972940 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015771	unclassified non-coding RNA gene	ChrX:2738747-2752054 (+)
A/J	MGP_AJ_G0015748	unclassified non-coding RNA gene	ChrX:2718684-2728105 (+)
AKR/J	MGP_AKRJ_G0015710	unclassified non-coding RNA gene	ChrX:2404610-2835202 (+)
BALB/cJ	MGP_BALBcJ_G0015709	unclassified non-coding RNA gene	ChrX:2713997-2724367 (+)
C3H/HeJ	MGP_C3HHeJ_G0015529	unclassified non-coding RNA gene	ChrX:2789967-2807682 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016163	unclassified non-coding RNA gene	ChrX:2829490-2844277 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013887	unclassified non-coding RNA gene	ChrX:2243567-2254826 (+)
CAST/EiJ	MGP_CASTEiJ_G0015084	unclassified non-coding RNA gene	ChrX:2682121-2696275 (+)
CBA/J	MGP_CBAJ_G0015509	unclassified non-coding RNA gene	ChrX:2982888-2996186 (+)
DBA/2J	MGP_DBA2J_G0015607	unclassified non-coding RNA gene	ChrX:2704753-2714286 (+)
FVB/NJ	MGP_FVBNJ_G0015613	unclassified non-coding RNA gene	ChrX:2669146-2679184 (+)
LP/J	MGP_LPJ_G0015689	unclassified non-coding RNA gene	ChrX:2760055-2770604 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015636	unclassified non-coding RNA gene	ChrX:2934213-2947672 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016207	unclassified non-coding RNA gene	ChrX:2722192-2731378 (+)
PWK/PhJ	MGP_PWKPhJ_G0014866	unclassified non-coding RNA gene	ChrX:2642888-2653812 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014653	unclassified non-coding RNA gene	ChrX:2705560-2710829 (+)
WSB/EiJ	MGP_WSBEiJ_G0015188	unclassified non-coding RNA gene	ChrX:2728158-2737991 (+)

Homology

• Gene Tree
  Gm6787
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086404 (Evidence)
• NCBI Gene
  627782

Representative Sequences			Length	Strain/Species
genomic	627782	NCBI Gene Model | MGI Sequence Detail	9615	C57BL/6J
transcript	NR_003632	RefSeq | MGI Sequence Detail	1472	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 3

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9