Gm5218 Pseudogene Detail

Summary

• Symbol
  Gm5218
• Name
  predicted gene 5218

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646583
  NCBI Gene: 108168218
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:81383282-81383746 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 38.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646583	pseudogene	Chr15:81383282-81396427 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022114	protein coding gene	Chr15:81923187-81923651 (-)
A/J	MGP_AJ_G0022075	protein coding gene	Chr15:79048337-79048751 (-)
AKR/J	MGP_AKRJ_G0022050	protein coding gene	Chr15:81239916-81240548 (-)
BALB/cJ	MGP_BALBcJ_G0022081	protein coding gene	Chr15:79084115-79084538 (-)
C3H/HeJ	MGP_C3HHeJ_G0021852	protein coding gene	Chr15:81245622-81246055 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0022524	protein coding gene	Chr15:85135928-85139483 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0021946	protein coding gene	Chr15:78528838-78529271 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0022014	protein coding gene	Chr15:82086693-82088180 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021944	protein coding gene	Chr15:92756464-92756928 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022538	protein coding gene	Chr15:81314239-81314703 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5218
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5218
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  2

• Ensembl
  ENSMUSG00000091198 (Evidence)
• NCBI Gene
  108168218

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091198	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000172270	Ensembl | MGI Sequence Detail	465	Not Applicable
polypeptide	XP_036015591	RefSeq | MGI Sequence Detail	232	C57BL/6J

References

• Summaries
  All 21

  Phenotypes 17
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27