Btf3-ps6 Pseudogene Detail

Summary

• Symbol
  Btf3-ps6
• Name
  basic transcription factor 3, pseudogene 6
• Synonyms
  Gm5314

• Feature Type
  pseudogene
• IDs
  MGI:3646639
  NCBI Gene: 384466
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:99747618-99748083 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 46.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646639	pseudogene	Chr6:99739480-99748229 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013617	pseudogene	Chr6:101741527-101741992 (+)
A/J	MGP_AJ_G0013598	pseudogene	Chr6:97858487-97858952 (+)
AKR/J	MGP_AKRJ_G0013560	pseudogene	Chr6:100535289-100535754 (+)
BALB/cJ	MGP_BALBcJ_G0013579	pseudogene	Chr6:97826750-97827215 (+)
C3H/HeJ	MGP_C3HHeJ_G0013359	pseudogene	Chr6:83868668-83869133 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013964	pseudogene	Chr6:104298553-104299018 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013120	pseudogene	Chr6:100776765-100777230 (+)
CBA/J	MGP_CBAJ_G0013398	pseudogene	Chr6:108296565-108297030 (+)
DBA/2J	MGP_DBA2J_G0013478	pseudogene	Chr6:96996058-96996523 (+)
FVB/NJ	MGP_FVBNJ_G0013477	pseudogene	Chr6:96166085-96166550 (+)
LP/J	MGP_LPJ_G0013555	pseudogene	Chr6:101782573-101783038 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013491	pseudogene	Chr6:112090292-112090757 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013955	pseudogene	Chr6:100457416-100457881 (+)
PWK/PhJ	MGP_PWKPhJ_G0012925	pseudogene	Chr6:96008964-96009429 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012705	pseudogene	Chr6:99348734-99349198 (+)
WSB/EiJ	MGP_WSBEiJ_G0013168	pseudogene	Chr6:100955388-100955853 (+)

Homology

• Gene Tree
  Btf3-ps6
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108082 (Evidence)
• NCBI Gene
  384466

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108082	Ensembl Gene Model | MGI Sequence Detail	466	C57BL/6J
transcript	ENSMUST00000204852	Ensembl | MGI Sequence Detail	466	Not Applicable

Other
Accession IDs

MGI:6450945

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Btf3-ps6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57985	Chr6:99747486-99747489 (+)	-130 bp