Gm6576 Pseudogene Detail

Summary

• Symbol
  Gm6576
• Name
  predicted gene 6576

• Feature Type
  pseudogene
• IDs
  MGI:3646644
  NCBI Gene: 625311
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:27025414-27026296 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 9.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646644	pseudogene	Chr15:27025388-27026343 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034293	protein coding gene	Chr8:130173093-130173535 (+)
A/J	MGP_AJ_G0021715	protein coding gene	Chr15:24125803-24131857 (+)
AKR/J	MGP_AKRJ_G0021693	protein coding gene	Chr15:24681630-24682248 (+)
BALB/cJ	MGP_BALBcJ_G0021722	protein coding gene	Chr15:24098101-24098831 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0022161	protein coding gene	Chr15:26141816-26142646 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031727	protein coding gene	Chr8:117461808-117462600 (+)
CAST/EiJ	MGP_CASTEiJ_G0029291	protein coding gene	Chr5:138579078-138581249 (-)
CBA/J	MGP_CBAJ_G0033950	protein coding gene	Chr8:139464918-139467895 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0034050	protein coding gene	Chr8:123110223-123110882 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0022184	protein coding gene	Chr15:24888928-24891204 (+)
PWK/PhJ	MGP_PWKPhJ_G0033006	protein coding gene	Chr8:123668619-123671904 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033466	protein coding gene	Chr9:62122764-62123430 (-)
WSB/EiJ	MGP_WSBEiJ_G0033421	protein coding gene	Chr8:129327657-129328188 (+)

Homology

• Gene Tree
  Gm6576
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm6576
• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000090544 (Evidence)
• NCBI Gene
  625311

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090544	Ensembl Gene Model | MGI Sequence Detail	883	C57BL/6J
transcript	ENSMUST00000169678	Ensembl | MGI Sequence Detail	883	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm6576:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130879	Chr15:27025382-27025384 (+)	-31 bp