Ncf2-rs Pseudogene Detail

Summary

• Symbol
  Ncf2-rs
• Name
  neutrophil cytosolic factor 2 related sequence
• Synonyms
  Gm9025, Ncf-2rs

• Feature Type
  pseudogene
• IDs
  MGI:97285
  NCBI Gene: 668181
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:112018786-112020953 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 63.63 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97285	pseudogene	Chr13:112018786-112020953 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011065	pseudogene	Chr13:114392015-114393799 (-)
A/J	MGP_AJ_G0011063	pseudogene	Chr13:109840291-109842188 (-)
AKR/J	MGP_AKRJ_G0011020	pseudogene	Chr13:113160047-113165416 (-)
BALB/cJ	MGP_BALBcJ_G0011039	pseudogene	Chr13:110541907-110543693 (-)
C3H/HeJ	MGP_C3HHeJ_G0010937	pseudogene	Chr13:112946046-112947830 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011318	pseudogene	Chr13:117819888-117821672 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009313	pseudogene	Chr1:143550962-143581430 (+)
CAST/EiJ	MGP_CASTEiJ_G0010110	pseudogene	Chr1:155517113-155546237 (+)
CBA/J	MGP_CBAJ_G0010910	pseudogene	Chr13:122342555-122344339 (-)
DBA/2J	MGP_DBA2J_G0010955	pseudogene	Chr13:109561133-109562917 (-)
FVB/NJ	MGP_FVBNJ_G0010968	pseudogene	Chr13:108255737-108257690 (-)
LP/J	MGP_LPJ_G0011044	pseudogene	Chr13:114448396-114452414 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010951	pseudogene	Chr13:122665072-122667759 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011300	pseudogene	Chr13:112612754-112615289 (-)
PWK/PhJ	MGP_PWKPhJ_G0010014	pseudogene	Chr1:149264616-149295267 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009826	pseudogene	Chr1:154491838-154522409 (+)
WSB/EiJ	MGP_WSBEiJ_G0010809	pseudogene	Chr13:113212230-113213753 (-)

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000082433 (Evidence), ENSMUSG00000114429 (Evidence)
• NCBI Gene
  668181

Representative Sequences			Length	Strain/Species
genomic	668181	NCBI Gene Model | MGI Sequence Detail	2168	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

Other
Accession IDs

MGD-MRK-12791, MGD-MRK-12794, MGI:3646679

References

• Summaries
  All 8
• Earliest
  J:10699 Francke U, et al., Genes for two autosomal recessive forms of chronic granulomatous disease assigned to 1q25 (NCF2) and 7q11.23 (NCF1). Am J Hum Genet. 1990 Sep;47(3):483-92
• Latest
  J:38568 Misumi DJ, et al., The physical and genetic map surrounding the Lyst gene on mouse chromosome 13. Genomics. 1997 Feb 15;40(1):147-50

TSS for Ncf2-rs:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124041	Chr13:112020894-112020910 (-)	51 bp
Tssr124040	Chr13:112020846-112020867 (-)	96 bp