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Gm5909 Pseudogene Detail
Summary
  • Symbol
    Gm5909
  • Name
    predicted gene 5909
  • Feature Type
    pseudogene
  • IDs
    MGI:3646686
    NCBI Gene: 546075
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr8:80837435-80838715 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 38.03 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    169 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646686
 pseudogene Chr8:80837046-80838797 (-)
129S1/SvImJ MGP_129S1SvImJ_G0014087
 pseudogene Chr8:80813561-80814797 (-)
A/J MGP_AJ_G0014107
 pseudogene Chr8:77591729-77592820 (-)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0014061
 pseudogene Chr8:77715109-77716641 (-)
C3H/HeJ MGP_C3HHeJ_G0013891
 pseudogene Chr8:80550655-80554022 (-)
C57BL/6NJ MGP_C57BL6NJ_G0014500
 pseudogene Chr8:83910509-83913535 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0010512
 pseudogene Chr2:77995301-78001839 (+)
CAST/EiJ MGP_CASTEiJ_G0013551
 pseudogene Chr8:79893032-79894091 (-)
CBA/J MGP_CBAJ_G0013873
 pseudogene Chr8:86876280-86883082 (-)
DBA/2J MGP_DBA2J_G0013950
 pseudogene Chr8:77300979-77302270 (-)
FVB/NJ MGP_FVBNJ_G0013953
 pseudogene Chr8:76255689-76256969 (-)
LP/J MGP_LPJ_G0014038
 pseudogene Chr8:80917946-80919184 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0013980
 pseudogene Chr8:89414667-89415947 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0014473
 pseudogene Chr8:79944913-79946193 (-)
PWK/PhJ MGP_PWKPhJ_G0013360
 pseudogene Chr8:76564435-76565655 (-)
SPRET/EiJ MGP_SPRETEiJ_G0013142
 pseudogene Chr8:78743060-78745273 (-)
WSB/EiJ MGP_WSBEiJ_G0013609
 pseudogene Chr8:80284035-80285547 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    32 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm5909
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082491 Ensembl Gene Model | MGI Sequence Detail 1281 C57BL/6J ±  kb
transcript ENSMUST00000119768 Ensembl | MGI Sequence Detail 1281 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 36
    Phenotypes 32
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
  • Latest
    J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory