Gm5268 Pseudogene Detail

Summary

• Symbol
  Gm5268
• Name
  predicted gene 5268

• Feature Type
  pseudogene
• IDs
  MGI:3646790
  NCBI Gene: 383640
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:45217227-45218166 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646790	pseudogene	Chr1:45217227-45218166 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010103	pseudogene	Chr1:44199194-44200131 (+)
A/J	MGP_AJ_G0010090	pseudogene	Chr1:42874916-42875853 (+)
AKR/J	MGP_AKRJ_G0010072	pseudogene	Chr1:43484635-43485572 (+)
BALB/cJ	MGP_BALBcJ_G0010078	pseudogene	Chr1:42485395-42486334 (+)
C3H/HeJ	MGP_C3HHeJ_G0010008	pseudogene	Chr1:43865704-43866641 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010327	pseudogene	Chr1:46006082-46007021 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0009839	pseudogene	Chr1:43781073-43782012 (+)
CBA/J	MGP_CBAJ_G0009978	pseudogene	Chr1:47356198-47357135 (+)
DBA/2J	MGP_DBA2J_G0010003	pseudogene	Chr1:42161040-42161977 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010094	pseudogene	Chr1:44563269-44564208 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009987	pseudogene	Chr1:49434949-49435886 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010305	pseudogene	Chr1:43669878-43670817 (+)
PWK/PhJ	MGP_PWKPhJ_G0009749	pseudogene	Chr1:41961855-41962794 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009563	pseudogene	Chr1:43680260-43681198 (+)
WSB/EiJ	MGP_WSBEiJ_G0009907	pseudogene	Chr1:43646162-43647101 (+)

Homology

• Gene Tree
  Gm5268
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5268
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000101937 (Evidence)
• NCBI Gene
  383640

Representative Sequences			Length	Strain/Species
genomic	383640	NCBI Gene Model | MGI Sequence Detail	940	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;