Gm8624 Pseudogene Detail

Summary

• Symbol
  Gm8624
• Name
  predicted gene 8624

• Feature Type
  pseudogene
• IDs
  MGI:3646811
  NCBI Gene: 667423
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:117311522-117311953 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 82.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646811	pseudogene	Chr11:117311466-117312543 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039661	pseudogene	Chr11:121658913-121659988 (-)
A/J	MGP_AJ_G0039659	pseudogene	Chr11:116271490-116272568 (-)
AKR/J	MGP_AKRJ_G0039585	pseudogene	Chr11:119818746-119819821 (-)
BALB/cJ	MGP_BALBcJ_G0039633	pseudogene	Chr11:116652381-116653456 (-)
C3H/HeJ	MGP_C3HHeJ_G0039295	pseudogene	Chr11:120098891-120099966 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040185	pseudogene	Chr11:125380341-125381421 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038414	pseudogene	Chr11:121521279-121522354 (-)
CBA/J	MGP_CBAJ_G0039263	pseudogene	Chr11:130300703-130301781 (-)
DBA/2J	MGP_DBA2J_G0039456	pseudogene	Chr11:115676307-115677382 (-)
FVB/NJ	MGP_FVBNJ_G0039412	pseudogene	Chr11:115295472-115296580 (-)
LP/J	MGP_LPJ_G0039498	pseudogene	Chr11:121999609-122000689 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039416	pseudogene	Chr11:129308315-129309390 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040291	pseudogene	Chr11:120464982-120466057 (-)
PWK/PhJ	MGP_PWKPhJ_G0038088	pseudogene	Chr11:117036158-117037236 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037839	pseudogene	Chr11:120191206-120192284 (-)
WSB/EiJ	MGP_WSBEiJ_G0038646	pseudogene	Chr11:120423639-120425216 (-)

Homology

• Gene Tree
  Gm8624
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000083705 (Evidence)
• NCBI Gene
  667423

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083705	Ensembl Gene Model | MGI Sequence Detail	432	C57BL/6J
transcript	ENSMUST00000118083	Ensembl | MGI Sequence Detail	432	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8624:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112027	Chr11:117311983-117311988 (-)	-33 bp