Gm7646 Pseudogene Detail

Summary

• Symbol
  Gm7646
• Name
  predicted gene 7646

• Feature Type
  pseudogene
• IDs
  MGI:3646880
  NCBI Gene: 665468
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:87438038-87459676 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 43.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  877 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646880	pseudogene	Chr5:87437995-87459676 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040381	pseudogene	Chr5:84565425-84598323 (-)
AKR/J	MGP_AKRJ_G0040313	pseudogene	Chr5:87392526-87416532 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0040006	pseudogene	Chr5:87854207-87875725 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040997	pseudogene	Chr5:91824033-91846941 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039077	pseudogene	Chr5:87176112-87193674 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040221	pseudogene	Chr5:88612652-88635727 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041077	pseudogene	Chr5:86935848-86955114 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm7646
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm7646
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000105897 (Evidence)
• NCBI Gene
  665468

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105897	Ensembl Gene Model | MGI Sequence Detail	21639	C57BL/6J
transcript	ENSMUST00000198590	Ensembl | MGI Sequence Detail	1559	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm7646:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51574	Chr5:87444125-87444126 (-)	15,550 bp