Gm6216 Pseudogene Detail

Summary

• Symbol
  Gm6216
• Name
  predicted gene 6216

• Feature Type
  pseudogene
• IDs
  MGI:3647030
  NCBI Gene: 621353
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:12726091-12726777 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 3.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647030	pseudogene	Chr1:12726067-12726968 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010003	pseudogene	Chr1:9980481-9981167 (+)
A/J	MGP_AJ_G0009983	pseudogene	Chr1:9991181-9991867 (+)
AKR/J	MGP_AKRJ_G0009966	pseudogene	Chr1:9873906-9874592 (+)
BALB/cJ	MGP_BALBcJ_G0009972	pseudogene	Chr1:9682629-9683315 (+)
C3H/HeJ	MGP_C3HHeJ_G0009903	pseudogene	Chr1:9857995-9858681 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010221	pseudogene	Chr1:10476217-10476903 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009002	pseudogene	Chr1:8631793-8632479 (+)
CAST/EiJ	MGP_CASTEiJ_G0009753	pseudogene	Chr1:10024309-10024995 (+)
CBA/J	MGP_CBAJ_G0009877	pseudogene	Chr1:10685965-10686651 (+)
DBA/2J	MGP_DBA2J_G0009900	pseudogene	Chr1:9587171-9587857 (+)
FVB/NJ	MGP_FVBNJ_G0009925	pseudogene	Chr1:9415654-9416340 (+)
LP/J	MGP_LPJ_G0009994	pseudogene	Chr1:10173363-10174049 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009885	pseudogene	Chr1:11412075-11412761 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010197	pseudogene	Chr1:9791124-9791810 (+)
PWK/PhJ	MGP_PWKPhJ_G0009657	pseudogene	Chr1:9405767-9406453 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009476	pseudogene	Chr1:10014462-10015148 (+)
WSB/EiJ	MGP_WSBEiJ_G0009814	pseudogene	Chr1:9809092-9809778 (+)

Homology

• Gene Tree
  Gm6216
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098163 (Evidence)
• NCBI Gene
  621353

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098163	Ensembl Gene Model | MGI Sequence Detail	687	C57BL/6J
transcript	ENSMUST00000182390	Ensembl | MGI Sequence Detail	687	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;