Gm6377 Gene Detail

Summary

• Symbol
  Gm6377
• Name
  predicted gene 6377

• Feature Type
  protein coding gene
• IDs
  MGI:3647255
  NCBI Gene: 622976
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  ChrX:108240362-108244045 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 47.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647255	protein coding gene	ChrX:108240362-108244051 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036023	protein coding gene	ChrX:106048180-106051863 (+)
A/J	MGP_AJ_G0036002	protein coding gene	ChrX:105903043-105906726 (+)
AKR/J	MGP_AKRJ_G0035921	protein coding gene	ChrX:109196825-109200508 (+)
BALB/cJ	MGP_BALBcJ_G0035993	protein coding gene	ChrX:104588942-104592625 (+)
C3H/HeJ	MGP_C3HHeJ_G0035699	protein coding gene	ChrX:106499528-106503211 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036519	protein coding gene	ChrX:109078897-109082580 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033347	protein coding gene	ChrX:102958934-102962632 (+)
CAST/EiJ	MGP_CASTEiJ_G0034986	protein coding gene	ChrX:90541125-90544811 (+)
CBA/J	MGP_CBAJ_G0035675	protein coding gene	ChrX:112509857-112513540 (+)
DBA/2J	MGP_DBA2J_G0035829	protein coding gene	ChrX:105063552-105067235 (+)
FVB/NJ	MGP_FVBNJ_G0035769	protein coding gene	ChrX:104456469-104460152 (+)
LP/J	MGP_LPJ_G0035921	protein coding gene	ChrX:107055686-107059369 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035800	protein coding gene	ChrX:117541451-117545188 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036546	protein coding gene	ChrX:105599020-105602703 (+)
PWK/PhJ	MGP_PWKPhJ_G0034682	protein coding gene	ChrX:88067837-88071513 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034511	protein coding gene	ChrX:91384021-91387657 (+)
WSB/EiJ	MGP_WSBEiJ_G0035124	protein coding gene	ChrX:104340528-104344211 (+)

Homology

• MGI Vertebrate Homology
  Gm6377 stringent orthology
  1 mouse;1 rat;1 zebrafish
  
• Gene Tree
  Gm6377
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS30354.1

• Ensembl
  ENSMUSG00000048621 (Evidence)
• NCBI Gene
  622976

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048621	Ensembl Gene Model | MGI Sequence Detail	3684	C57BL/6J
transcript	ENSMUST00000060013	Ensembl | MGI Sequence Detail	2793	Not Applicable
polypeptide	ENSMUSP00000049931	Ensembl | MGI Sequence Detail	303	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR027869 TASL protein

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 3
• Earliest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Gm6377:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161871	ChrX:108240356-108240369 (+)	1 bp
Tssr161872	ChrX:108240378-108240400 (+)	27 bp
Tssr161873	ChrX:108240408-108240424 (+)	54 bp
Tssr161874	ChrX:108240428-108240435 (+)	70 bp
Tssr161875	ChrX:108243174-108243183 (+)	2,817 bp
Tssr161876	ChrX:108243246-108243257 (+)	2,890 bp