Gm5809 Pseudogene Detail

Summary

• Symbol
  Gm5809
• Name
  predicted pseudogene 5809

• Feature Type
  pseudogene
• IDs
  MGI:3647324
  NCBI Gene: 545152
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:22049141-22049668 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 13.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647324	pseudogene	Chr16:22049141-22049669 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011259	pseudogene	Chr16:19711293-19711809 (+)
A/J	MGP_AJ_G0011243	pseudogene	Chr16:18756512-18757923 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0011214	pseudogene	Chr16:18955515-18956015 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009650	pseudogene	Chr11:73483708-73491953 (-)
CAST/EiJ	MGP_CASTEiJ_G0010935	pseudogene	Chr16:19634962-19635487 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0011137	pseudogene	Chr16:18738242-18738800 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011234	pseudogene	Chr16:19460271-19460940 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011488	pseudogene	Chr16:19498518-19499109 (+)
PWK/PhJ	MGP_PWKPhJ_G0010809	pseudogene	Chr16:18976244-18976983 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010190	pseudogene	Chr11:78682438-78690880 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5809
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000043870 (Evidence)
• NCBI Gene
  545152

Representative Sequences			Length	Strain/Species
genomic	545152	NCBI Gene Model | MGI Sequence Detail	528	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5809:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137540	Chr16:22049084-22049134 (+)	-32 bp