Trav7-1 Gene Detail

Summary

• Symbol
  Trav7-1
• Name
  T cell receptor alpha variable 7-1
• Synonyms
  Gm16452

• Feature Type
  gene segment
• IDs
  MGI:3647460
  NCBI Gene: 671652
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:52892274-52892785 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647460	gene segment	Chr14:52892274-52892786 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002522	gene segment	Chr14:46713845-46714361 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0002615	gene segment	Chr14:48783647-48784158 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002223	gene segment	Chr14:44597269-44597782 (+)
CAST/EiJ	MGP_CASTEiJ_G0002435	gene segment	Chr14:44070223-44070752 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0002479	gene segment	Chr14:44829611-44830122 (+)
LP/J	MGP_LPJ_G0002518	gene segment	Chr14:47339128-47339644 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002447	gene segment	Chr14:49719496-49720007 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002611	gene segment	Chr14:46484165-46484681 (+)
PWK/PhJ	MGP_PWKPhJ_G0002426	gene segment	Chr14:42733615-42734144 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002354	gene segment	Chr14:43063948-43064477 (+)
WSB/EiJ	no annotation

Homology

• Human Ortholog
  TRAV12-3, T cell receptor alpha variable 12-3

• Vertebrate Orthologs
  6

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV12-3, T cell receptor alpha variable 12-3
  
• Synonyms
  TCRAV12S3, TCRAV2S2, TRAV123
• Links
  HGNC:12107

  NCBI Gene ID: 28672

  UniProt: A0A0B4J271

  
  
• Chr Location
  14q11.2; chr14:21965451-21966061 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav7-1 stringent orthology
  1 human;1 mouse;5 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV12-3
• Gene Tree
  Trav7-1
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000104620 (Evidence)
• NCBI Gene
  671652

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104620	Ensembl Gene Model | MGI Sequence Detail	512	C57BL/6J
transcript	ENSMUST00000198019	Ensembl | MGI Sequence Detail	337	Not Applicable
polypeptide	ENSMUSP00000142920	Ensembl | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051006 T cell receptor variable domain

References

• Summaries
  All 8

  Gene Ontology 1
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trav7-1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125470	Chr14:52892115-52892131 (+)	-151 bp