Gm6987 Pseudogene Detail

Summary

• Symbol
  Gm6987
• Name
  predicted pseudogene 6987

• Feature Type
  pseudogene
• IDs
  MGI:3647485
  NCBI Gene: 629591
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:93067466-93068232 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 41.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647485	pseudogene	ChrX:93067466-93068232 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014616	pseudogene	ChrX:90407562-90408328 (+)
A/J	MGP_AJ_G0014625	pseudogene	ChrX:90497504-90498377 (+)
AKR/J	MGP_AKRJ_G0014548	pseudogene	ChrX:92882704-92883470 (+)
BALB/cJ	MGP_BALBcJ_G0014574	pseudogene	ChrX:89192182-89192948 (+)
C3H/HeJ	MGP_C3HHeJ_G0014410	pseudogene	ChrX:90767258-90768024 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015056	pseudogene	ChrX:93168050-93168816 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012763	pseudogene	ChrX:88668226-88669013 (+)
CAST/EiJ	MGP_CASTEiJ_G0014035	pseudogene	ChrX:75439083-75439849 (+)
CBA/J	MGP_CBAJ_G0014396	pseudogene	ChrX:95856119-95856885 (+)
DBA/2J	MGP_DBA2J_G0014478	pseudogene	ChrX:89746158-89746924 (+)
FVB/NJ	MGP_FVBNJ_G0014465	pseudogene	ChrX:89138959-89139725 (+)
LP/J	MGP_LPJ_G0014576	pseudogene	ChrX:91193878-91194644 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014504	pseudogene	ChrX:100145812-100146578 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015023	pseudogene	ChrX:90123757-90124523 (+)
PWK/PhJ	MGP_PWKPhJ_G0013841	pseudogene	ChrX:73228751-73229614 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013634	pseudogene	ChrX:76295584-76296343 (+)
WSB/EiJ	MGP_WSBEiJ_G0014113	pseudogene	ChrX:88925664-88926694 (+)

Homology

• Gene Tree
  Gm6987
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081055 (Evidence)
• NCBI Gene
  629591

Representative Sequences			Length	Strain/Species
genomic	629591	NCBI Gene Model | MGI Sequence Detail	767	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6987:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161483	ChrX:93067418-93067428 (+)	-43 bp