Gm4945 Pseudogene Detail

Summary

• Symbol
  Gm4945
• Name
  predicted gene 4945

• Feature Type
  pseudogene
• IDs
  MGI:3647512
  NCBI Gene: 240110
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:47353513-47353965 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 22.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647512	pseudogene	Chr17:47353391-47354104 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011368	pseudogene	Chr17:48159001-48159453 (-)
A/J	MGP_AJ_G0011359	pseudogene	Chr17:46986278-46986709 (-)
AKR/J	MGP_AKRJ_G0011324	pseudogene	Chr17:47344606-47345058 (-)
BALB/cJ	MGP_BALBcJ_G0011339	pseudogene	Chr17:46889106-46889558 (-)
C3H/HeJ	MGP_C3HHeJ_G0011225	pseudogene	Chr17:48092489-48092941 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011632	pseudogene	Chr17:50212598-50213050 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011351	pseudogene	Chr4:87261810-87262219 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011206	pseudogene	Chr17:52042031-52042483 (-)
DBA/2J	MGP_DBA2J_G0011258	pseudogene	Chr17:45748322-45748774 (-)
FVB/NJ	MGP_FVBNJ_G0011257	pseudogene	Chr17:45384998-45385450 (-)
LP/J	MGP_LPJ_G0011332	pseudogene	Chr17:48832493-48832945 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011251	pseudogene	Chr17:51552635-51553114 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011609	pseudogene	Chr17:47718787-47719239 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0011982	pseudogene	Chr4:91653338-91653799 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4945
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000062472 (Evidence)
• NCBI Gene
  240110

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062472	Ensembl Gene Model | MGI Sequence Detail	453	C57BL/6J
transcript	ENSMUST00000075152	Ensembl | MGI Sequence Detail	453	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm4945:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr148417	Chr17:47353983-47354016 (-)	-35 bp