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Bpifa6 Gene Detail
Summary
  • Symbol
    Bpifa6
  • Name
    BPI fold containing family A, member 6
  • Synonyms
    Gm5840
  • Feature Type
    protein coding gene
  • IDs
    MGI:3647736
    NCBI Gene: 545477
  • Alliance
    gene page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:153816865-153842415 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 76.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1160 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647736
 protein coding gene Chr2:153816865-153842415 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026704
 protein coding gene Chr2:158685880-158711421 (+)
A/J MGP_AJ_G0026670
 protein coding gene Chr2:152296827-152322850 (+)
AKR/J MGP_AKRJ_G0026641
 protein coding gene Chr2:156780388-156805940 (+)
BALB/cJ MGP_BALBcJ_G0026680
 protein coding gene Chr2:152636128-152661673 (+)
C3H/HeJ MGP_C3HHeJ_G0026422
 protein coding gene Chr2:157151347-157176891 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027129
 protein coding gene Chr2:163309475-163334957 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024499
 protein coding gene Chr2:145870446-145895757 (+)
CAST/EiJ MGP_CASTEiJ_G0025883
 protein coding gene Chr2:157420114-157442007 (+)
CBA/J MGP_CBAJ_G0026401
 protein coding gene Chr2:169309668-169335335 (+)
DBA/2J MGP_DBA2J_G0026536
 protein coding gene Chr2:151524069-151550046 (+)
FVB/NJ MGP_FVBNJ_G0026502
 protein coding gene Chr2:149971402-149996948 (+)
LP/J MGP_LPJ_G0026641
 protein coding gene Chr2:158802821-158828362 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026524
 protein coding gene Chr2:173292261-173318309 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027184
 protein coding gene Chr2:156665912-156691466 (+)
PWK/PhJ MGP_PWKPhJ_G0025617
 protein coding gene Chr2:151057584-151083077 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025420
 protein coding gene Chr2:155526391-155553045 (+)
WSB/EiJ MGP_WSBEiJ_G0025953
 protein coding gene Chr2:157575713-157601372 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 545477 NCBI Gene Model | MGI Sequence Detail 25551 C57BL/6J ±  kb
transcript NM_001080811 RefSeq | MGI Sequence Detail 1605 C57BL/6  
polypeptide NP_001074280 RefSeq | MGI Sequence Detail 367 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR017943 Bactericidal permeability-increasing protein, alpha/beta domain superfamily
    IPR051660 BPI fold-containing BPI/LBP
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 4
  • Earliest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
  • Latest
    J:174122 Bingle CD, et al., Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a subfamily of the BPI fold-containing superfamily. Biochem Soc Trans. 2011 Aug 1;39(4):977-83
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory