Gm4825 Pseudogene Detail

Summary

• Symbol
  Gm4825
• Name
  predicted pseudogene 4825

• Feature Type
  pseudogene
• IDs
  MGI:3647768
  NCBI Gene: 223745
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:85395013-85395420 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 40.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647768	pseudogene	Chr15:85395013-85395456 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011209	pseudogene	Chr15:86385630-86386037 (+)
A/J	MGP_AJ_G0011199	pseudogene	Chr15:83172917-83173324 (+)
AKR/J	MGP_AKRJ_G0011158	pseudogene	Chr15:85626694-85627101 (+)
BALB/cJ	MGP_BALBcJ_G0011167	pseudogene	Chr15:83300136-83300543 (+)
C3H/HeJ	MGP_C3HHeJ_G0011066	pseudogene	Chr15:85569173-85569580 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011464	pseudogene	Chr15:89625677-89626084 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010046	pseudogene	Chr15:79501186-79501590 (+)
CAST/EiJ	MGP_CASTEiJ_G0010891	pseudogene	Chr15:86369500-86369907 (+)
CBA/J	MGP_CBAJ_G0011046	pseudogene	Chr15:92601774-92602181 (+)
DBA/2J	MGP_DBA2J_G0011094	pseudogene	Chr15:82636349-82636756 (+)
FVB/NJ	MGP_FVBNJ_G0011095	pseudogene	Chr15:81706632-81707039 (+)
LP/J	MGP_LPJ_G0011185	pseudogene	Chr15:86552485-86552892 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011089	pseudogene	Chr15:97305362-97305769 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011442	pseudogene	Chr15:85625589-85625996 (+)
PWK/PhJ	MGP_PWKPhJ_G0010763	pseudogene	Chr15:82646382-82646789 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010587	pseudogene	Chr15:85330648-85331055 (+)
WSB/EiJ	MGP_WSBEiJ_G0010937	pseudogene	Chr15:86122862-86123269 (+)

Homology

• Gene Tree
  Gm4825
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  22 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm4825
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000063548 (Evidence)
• NCBI Gene
  223745

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000063548	Ensembl Gene Model | MGI Sequence Detail	408	C57BL/6J
transcript	ENSMUST00000079690	Ensembl | MGI Sequence Detail	408	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 28

  Diseases 1

  Phenotypes 22
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27