Igkv2-116 Pseudogene Detail

Summary

• Symbol
  Igkv2-116
• Name
  immunoglobulin kappa variable 2-116

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:3647785
  NCBI Gene: 434026
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:68128869-68129601 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647785	pseudogenic gene segment	Chr6:68128869-68129601 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000251	pseudogenic gene segment	Chr6:68483703-68484435 (+)
A/J	MGP_AJ_G0000224	pseudogenic gene segment	Chr6:65579863-65580582 (+)
AKR/J	MGP_AKRJ_G0000227	pseudogenic gene segment	Chr6:67544345-67545077 (+)
BALB/cJ	MGP_BALBcJ_G0000222	pseudogenic gene segment	Chr6:65868419-65869151 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0000328	pseudogenic gene segment	Chr6:70107618-70108350 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000222	pseudogenic gene segment	Chr6:67829651-67830381 (-)
CBA/J	MGP_CBAJ_G0000213	pseudogenic gene segment	Chr6:72924850-72925582 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0000260	pseudogenic gene segment	Chr6:68202396-68203128 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0000308	pseudogenic gene segment	Chr6:67594952-67595723 (+)
PWK/PhJ	MGP_PWKPhJ_G0000183	pseudogenic gene segment	Chr6:64164071-64164944 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000169	pseudogenic gene segment	Chr6:67001707-67002438 (+)
WSB/EiJ	MGP_WSBEiJ_G0000224	pseudogenic gene segment	Chr6:67712485-67713217 (+)

Homology

• Gene Tree
  Igkv2-116
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000106630 (Evidence)
• NCBI Gene
  434026

Representative Sequences			Length	Strain/Species
genomic	434026	NCBI Gene Model | MGI Sequence Detail	733	C57BL/6J
transcript	LC715420	GenBank | ENA | DDBJ | MGI Sequence Detail	558	Not Specified

References

• Summaries
  All 6
• Earliest
  J:32635 Lawler AM, et al., Early rearrangements of genes encoding murine immunoglobulin kappa chains, unlike genes encoding heavy chains, use variable gene segments dispersed throughout the locus. Proc Natl Acad Sci U S A. 1989 Sep;86(17):6744-8
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Igkv2-116:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56917	Chr6:68128838-68128840 (+)	-30 bp