Gm6946 Pseudogene Detail

Summary

• Symbol
  Gm6946
• Name
  predicted gene 6946

• Feature Type
  pseudogene
• IDs
  MGI:3647908
  NCBI Gene: 629081
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:12476613-12477599 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 7.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647908	pseudogene	Chr7:12476595-12477807 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013807	pseudogene	Chr7:10131901-10132887 (+)
A/J	MGP_AJ_G0013802	pseudogene	Chr7:9977710-9978696 (+)
AKR/J	MGP_AKRJ_G0013752	pseudogene	Chr7:10196718-10197704 (+)
BALB/cJ	MGP_BALBcJ_G0013784	pseudogene	Chr7:10095566-10096552 (+)
C3H/HeJ	MGP_C3HHeJ_G0013610	pseudogene	Chr7:10302858-10303844 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014177	pseudogene	Chr7:10653883-10654869 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009406	pseudogene	Chr10:17321781-17322772 (+)
CAST/EiJ	MGP_CASTEiJ_G0013292	pseudogene	Chr7:7847390-7848376 (+)
CBA/J	MGP_CBAJ_G0013587	pseudogene	Chr7:10845549-10846535 (+)
DBA/2J	MGP_DBA2J_G0013668	pseudogene	Chr7:9872033-9873019 (+)
FVB/NJ	MGP_FVBNJ_G0013667	pseudogene	Chr7:9863206-9864192 (+)
LP/J	MGP_LPJ_G0013750	pseudogene	Chr7:10215802-10216788 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013681	pseudogene	Chr7:10947617-10948603 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014158	pseudogene	Chr7:9976864-9977850 (+)
PWK/PhJ	MGP_PWKPhJ_G0013104	pseudogene	Chr7:8345650-8346636 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012883	pseudogene	Chr7:6084372-6085358 (+)
WSB/EiJ	MGP_WSBEiJ_G0013352	pseudogene	Chr7:10006131-10007117 (+)

Homology

• Gene Tree
  Gm6946
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098135 (Evidence)
• NCBI Gene
  629081

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098135	Ensembl Gene Model | MGI Sequence Detail	987	C57BL/6J
transcript	ENSMUST00000182237	Ensembl | MGI Sequence Detail	987	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;