Gm9949 Gene Detail

Summary

• Symbol
  Gm9949
• Name
  predicted gene 9949
• Synonyms
  EG225609

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3647947
  NCBI Gene: 225609
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:62313187-62337877 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 35.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  760 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647947	protein coding gene	Chr18:62313106-62339461 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024489	protein coding gene	Chr18:62122948-62127232 (+)
A/J	MGP_AJ_G0024456	protein coding gene	Chr18:59439428-59443712 (+)
AKR/J	MGP_AKRJ_G0024426	protein coding gene	Chr18:61088095-61092375 (+)
BALB/cJ	MGP_BALBcJ_G0024455	protein coding gene	Chr18:59580524-59584808 (+)
C3H/HeJ	MGP_C3HHeJ_G0024223	protein coding gene	Chr18:61315476-61319755 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024902	protein coding gene	Chr18:63787854-63792133 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022333	protein coding gene	Chr18:58984265-58988756 (+)
CAST/EiJ	MGP_CASTEiJ_G0023696	protein coding gene	Chr18:61205312-61209614 (+)
CBA/J	MGP_CBAJ_G0024193	protein coding gene	Chr18:65855537-65859821 (+)
DBA/2J	MGP_DBA2J_G0024323	protein coding gene	Chr18:59112739-59117018 (+)
FVB/NJ	MGP_FVBNJ_G0024289	protein coding gene	Chr18:58521280-58525564 (+)
LP/J	MGP_LPJ_G0024407	protein coding gene	Chr18:62004817-62009101 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024318	protein coding gene	Chr18:67411179-67415459 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024949	protein coding gene	Chr18:61297520-61301804 (+)
PWK/PhJ	MGP_PWKPhJ_G0023439	protein coding gene	Chr18:59352176-59356475 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023245	protein coding gene	Chr18:61514707-61518998 (+)
WSB/EiJ	MGP_WSBEiJ_G0023760	protein coding gene	Chr18:61156017-61160297 (+)

Homology

• Gene Tree
  Gm9949
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  12
• UniProt
  1

• Ensembl
  ENSMUSG00000054589 (Evidence)
• NCBI Gene
  225609

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054589	Ensembl Gene Model | MGI Sequence Detail	24691	C57BL/6J
transcript	ENSMUST00000242554	Ensembl | MGI Sequence Detail	1640	Not Applicable
polypeptide	NP_001013776	RefSeq | MGI Sequence Detail	104	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 11
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm9949:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151487	Chr18:62313190-62313253 (+)	35 bp
Tssr151488	Chr18:62315997-62316043 (+)	2,833 bp