Gm6450 Pseudogene Detail

Summary

• Symbol
  Gm6450
• Name
  predicted gene 6450

• Feature Type
  pseudogene
• IDs
  MGI:3648082
  NCBI Gene: 623798
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:93151690-93152263 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648082	pseudogene	Chr5:93151650-93152364 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014968	pseudogene	ChrX:156151364-156151931 (+)
A/J	MGP_AJ_G0013167	pseudogene	Chr5:90466978-90467551 (+)
AKR/J	MGP_AKRJ_G0013134	pseudogene	Chr5:93442560-93443133 (+)
BALB/cJ	MGP_BALBcJ_G0013147	pseudogene	Chr5:91349192-91349765 (+)
C3H/HeJ	MGP_C3HHeJ_G0012994	pseudogene	Chr5:93837948-93838521 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013509	pseudogene	Chr5:97954802-97955375 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012725	pseudogene	Chr5:93221095-93221668 (+)
CBA/J	MGP_CBAJ_G0012966	pseudogene	Chr5:101375262-101375835 (+)
DBA/2J	MGP_DBA2J_G0013046	pseudogene	Chr5:90520808-90521381 (+)
FVB/NJ	MGP_FVBNJ_G0013049	pseudogene	Chr5:89379837-89380368 (+)
LP/J	MGP_LPJ_G0013116	pseudogene	Chr5:94586285-94586858 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013067	pseudogene	Chr5:106253780-106255225 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013512	pseudogene	Chr5:92962435-92963008 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6450
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm6450
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000106930 (Evidence)
• NCBI Gene
  623798

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106930	Ensembl Gene Model | MGI Sequence Detail	574	C57BL/6J
transcript	ENSMUST00000200896	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm6450:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47350	Chr5:93151654-93151669 (+)	-28 bp