Gm8396 Pseudogene Detail

Summary

• Symbol
  Gm8396
• Name
  predicted gene 8396

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648154
  NCBI Gene: 666976
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:14667743-14668565 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 4.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648154	pseudogene	Chr14:14667743-14668594 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011068	pseudogene	Chr14:119840-120662 (+)
A/J	MGP_AJ_G0011066	pseudogene	Chr14:97426-98248 (+)
AKR/J	MGP_AKRJ_G0011023	pseudogene	Chr14:100492-101314 (+)
BALB/cJ	MGP_BALBcJ_G0011044	pseudogene	Chr14:93960-94782 (+)
C3H/HeJ	MGP_C3HHeJ_G0010941	pseudogene	Chr14:106508-107330 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011322	pseudogene	Chr14:122064-122886 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009913	pseudogene	Chr14:1040780-1041605 (+)
CAST/EiJ	MGP_CASTEiJ_G0010760	pseudogene	Chr14:101082-101903 (+)
CBA/J	MGP_CBAJ_G0010913	pseudogene	Chr14:104657-105479 (+)
DBA/2J	MGP_DBA2J_G0010959	pseudogene	Chr14:93112-93934 (+)
FVB/NJ	MGP_FVBNJ_G0010971	pseudogene	Chr14:91283-92105 (+)
LP/J	MGP_LPJ_G0011048	pseudogene	Chr14:99188-100010 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010955	pseudogene	Chr14:118168-118990 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011303	pseudogene	Chr14:104191-105013 (+)
PWK/PhJ	MGP_PWKPhJ_G0010636	pseudogene	Chr14:114841-115663 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010455	pseudogene	Chr14:108048-108870 (+)
WSB/EiJ	MGP_WSBEiJ_G0010812	pseudogene	Chr14:100788-101610 (+)

Homology

• Gene Tree
  Gm8396
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000049460 (Evidence)
• NCBI Gene
  666976

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049460	Ensembl Gene Model | MGI Sequence Detail	823	C57BL/6J
transcript	ENSMUST00000057361	Ensembl | MGI Sequence Detail	823	Not Applicable
polypeptide	XP_036014836	RefSeq | MGI Sequence Detail	254	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8396:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124211	Chr14:14668628-14668632 (-)	-65 bp