Rpl18a-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl18a-ps2
• Name
  ribosomal protein L18A, pseudogene 2
• Synonyms
  Gm6824

• Feature Type
  pseudogene
• IDs
  MGI:3648164
  NCBI Gene: 628006
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:67618514-67618687 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648164	pseudogene	Chr6:67618481-67618687 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013523	pseudogene	Chr6:67654390-67654563 (-)
A/J	MGP_AJ_G0013511	pseudogene	Chr6:64913583-64913746 (-)
AKR/J	MGP_AKRJ_G0013477	pseudogene	Chr6:66744108-66744271 (-)
BALB/cJ	MGP_BALBcJ_G0013489	pseudogene	Chr6:65081019-65081182 (-)
C3H/HeJ	MGP_C3HHeJ_G0013448	pseudogene	Chr6:117391631-117391794 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013875	pseudogene	Chr6:69270917-69271090 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013039	pseudogene	Chr6:67153448-67153621 (-)
CBA/J	MGP_CBAJ_G0013306	pseudogene	Chr6:72085167-72085330 (-)
DBA/2J	MGP_DBA2J_G0013390	pseudogene	Chr6:64403623-64403786 (-)
FVB/NJ	MGP_FVBNJ_G0013389	pseudogene	Chr6:63885528-64417156 (-)
LP/J	MGP_LPJ_G0013461	pseudogene	Chr6:67731896-67732069 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013409	pseudogene	Chr6:75999019-76516512 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014799	pseudogene	ChrX:42449942-42450115 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013087	pseudogene	Chr6:67140691-67140854 (-)

Homology

• Gene Tree
  Rpl18a-ps2
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000105464 (Evidence)
• NCBI Gene
  628006

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105464	Ensembl Gene Model | MGI Sequence Detail	174	C57BL/6J
transcript	ENSMUST00000197158	Ensembl | MGI Sequence Detail	174	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;