Gm6444 Pseudogene Detail

Summary

• Symbol
  Gm6444
• Name
  predicted gene 6444

• Feature Type
  pseudogene
• IDs
  MGI:3648226
  NCBI Gene: 623672
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:123204305-123204762 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 62.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648226	pseudogene	Chr5:123204290-123204867 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013263	pseudogene	Chr5:126745550-126746007 (+)
A/J	MGP_AJ_G0013244	pseudogene	Chr5:121498943-121499400 (+)
AKR/J	MGP_AKRJ_G0013210	pseudogene	Chr5:125405295-125405752 (+)
BALB/cJ	MGP_BALBcJ_G0013224	pseudogene	Chr5:122833488-122833945 (+)
C3H/HeJ	MGP_C3HHeJ_G0013073	pseudogene	Chr5:126032064-126032521 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013591	pseudogene	Chr5:131636169-131636626 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012798	pseudogene	Chr5:125132683-125133140 (+)
CBA/J	MGP_CBAJ_G0013041	pseudogene	Chr5:136801122-136801579 (+)
DBA/2J	MGP_DBA2J_G0013124	pseudogene	Chr5:121546302-121546759 (+)
FVB/NJ	MGP_FVBNJ_G0013123	pseudogene	Chr5:120545865-120546322 (+)
LP/J	MGP_LPJ_G0013194	pseudogene	Chr5:127281383-127282400 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013142	pseudogene	Chr5:140487390-140487847 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013593	pseudogene	Chr5:125005944-125006401 (+)
PWK/PhJ	MGP_PWKPhJ_G0012611	pseudogene	Chr5:120332168-120332625 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013388	pseudogene	ChrX:15392551-15394391 (-)
WSB/EiJ	MGP_WSBEiJ_G0012836	pseudogene	Chr5:125671946-125672403 (+)

Homology

• Gene Tree
  Gm6444
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6444
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000080836 (Evidence)
• NCBI Gene
  623672

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080836	Ensembl Gene Model | MGI Sequence Detail	458	C57BL/6J
transcript	ENSMUST00000119611	Ensembl | MGI Sequence Detail	458	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm6444:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48751	Chr5:123204270-123204297 (+)	-21 bp