Gm6954 Pseudogene Detail

Summary

• Symbol
  Gm6954
• Name
  predicted pseudogene 6954

• Feature Type
  pseudogene
• IDs
  MGI:3648228
  NCBI Gene: 629182
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:79709919-79710143 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648228	pseudogene	ChrX:79709866-79710245 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014554	pseudogene	ChrX:76576627-76576851 (+)
A/J	MGP_AJ_G0014565	pseudogene	ChrX:76801726-76801950 (+)
AKR/J	MGP_AKRJ_G0014489	pseudogene	ChrX:78856518-78856742 (+)
BALB/cJ	MGP_BALBcJ_G0014517	pseudogene	ChrX:75625592-75625816 (+)
C3H/HeJ	MGP_C3HHeJ_G0014351	pseudogene	ChrX:76985421-76985645 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014993	pseudogene	ChrX:78970841-78971065 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013975	pseudogene	ChrX:62084491-62084715 (+)
CBA/J	MGP_CBAJ_G0014336	pseudogene	ChrX:81058093-81058317 (+)
DBA/2J	MGP_DBA2J_G0014416	pseudogene	ChrX:76260824-76261048 (+)
FVB/NJ	MGP_FVBNJ_G0014405	pseudogene	ChrX:75557841-75558065 (+)
LP/J	MGP_LPJ_G0014513	pseudogene	ChrX:77413053-77413277 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014448	pseudogene	ChrX:84092281-84092505 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014960	pseudogene	ChrX:76391429-76391653 (+)
PWK/PhJ	MGP_PWKPhJ_G0013782	pseudogene	ChrX:60175867-60176091 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013582	pseudogene	ChrX:63009544-63009768 (+)
WSB/EiJ	MGP_WSBEiJ_G0014051	pseudogene	ChrX:75397206-75397430 (+)

Homology

• Gene Tree
  Gm6954
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084300 (Evidence)
• NCBI Gene
  629182

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084300	Ensembl Gene Model | MGI Sequence Detail	225	C57BL/6J
transcript	ENSMUST00000117416	Ensembl | MGI Sequence Detail	225	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;