Gm6283 Pseudogene Detail

Summary

• Symbol
  Gm6283
• Name
  predicted gene 6283

• Feature Type
  pseudogene
• IDs
  MGI:3648260
  NCBI Gene: 102638184
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:127149018-127150017 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 74.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648260	pseudogene	Chr10:127148879-127150310 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010551	pseudogene	Chr10:130903455-130904454 (+)
A/J	MGP_AJ_G0010545	pseudogene	Chr10:125658392-125659391 (+)
AKR/J	MGP_AKRJ_G0010505	pseudogene	Chr10:129374418-129375417 (+)
BALB/cJ	MGP_BALBcJ_G0010519	pseudogene	Chr10:126070890-126071933 (+)
C3H/HeJ	MGP_C3HHeJ_G0010443	pseudogene	Chr10:129525692-129528561 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010786	pseudogene	Chr10:135340983-135342095 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009462	pseudogene	Chr10:119667584-119668591 (+)
CAST/EiJ	MGP_CASTEiJ_G0010268	pseudogene	Chr10:130184906-130185905 (+)
CBA/J	MGP_CBAJ_G0010414	pseudogene	Chr10:140790547-140791546 (+)
DBA/2J	MGP_DBA2J_G0010443	pseudogene	Chr10:124750869-124751868 (+)
FVB/NJ	MGP_FVBNJ_G0010461	pseudogene	Chr10:123692112-123695060 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010438	pseudogene	Chr10:143494240-143497566 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010766	pseudogene	Chr10:129439234-129440233 (+)
PWK/PhJ	MGP_PWKPhJ_G0010168	pseudogene	Chr10:124954401-124955399 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009981	pseudogene	Chr10:128477625-128478502 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6283
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000098057 (Evidence)
• NCBI Gene
  102638184

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098057	Ensembl Gene Model | MGI Sequence Detail	1000	C57BL/6J
transcript	ENSMUST00000182369	Ensembl | MGI Sequence Detail	1000	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9