Gm9246 Pseudogene Detail

Summary

• Symbol
  Gm9246
• Name
  predicted gene 9246

• Feature Type
  pseudogene
• IDs
  MGI:3648324
  NCBI Gene: 668565
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:40984865-40988243 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  274 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648324	pseudogene	Chr7:40984808-40988297 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013877	pseudogene	Chr7:41035195-41038521 (+)
A/J	MGP_AJ_G0013897	pseudogene	Chr7:40137341-40140830 (+)
AKR/J	MGP_AKRJ_G0013832	pseudogene	Chr7:41396636-41400125 (+)
BALB/cJ	MGP_BALBcJ_G0013860	pseudogene	Chr7:40341200-40344689 (+)
C3H/HeJ	MGP_C3HHeJ_G0013688	pseudogene	Chr7:41981247-41984725 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014275	pseudogene	Chr7:42676347-42684443 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013666	pseudogene	Chr7:44435700-44439178 (+)
DBA/2J	MGP_DBA2J_G0013750	pseudogene	Chr7:40027174-40031222 (+)
FVB/NJ	MGP_FVBNJ_G0013744	pseudogene	Chr7:39741190-39744583 (+)
LP/J	MGP_LPJ_G0013822	pseudogene	Chr7:41558696-41562074 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013770	pseudogene	Chr7:43223854-43231624 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014243	pseudogene	Chr7:40632371-40638018 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9246
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000082080 (Evidence)
• NCBI Gene
  668565

Representative Sequences			Length	Strain/Species
genomic	668565	NCBI Gene Model | MGI Sequence Detail	3379	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm9246:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65967	Chr7:40984859-40984875 (+)	2 bp