Gm9243 Pseudogene Detail

Summary

• Symbol
  Gm9243
• Name
  predicted gene 9243

• Feature Type
  pseudogene
• IDs
  MGI:3648329
  NCBI Gene: 668560
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr14:79724105-79767340 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 42.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1125 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648329	pseudogene	Chr14:79724105-79767340 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9243
• Find Mice (IMSR)
  15 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  668560

Representative Sequences			Length	Strain/Species
genomic	668560	NCBI Gene Model | MGI Sequence Detail	43236	C57BL/6J
transcript	AI481233	GenBank | ENA | DDBJ | MGI Sequence Detail	428	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm9243:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126796	Chr14:79753058-79753134 (+)	28,991 bp
Tssr126797	Chr14:79753135-79753147 (+)	29,036 bp
Tssr126798	Chr14:79753154-79753172 (+)	29,058 bp
Tssr126799	Chr14:79753862-79753885 (+)	29,769 bp
Tssr126800	Chr14:79754008-79754013 (+)	29,906 bp
Tssr126801	Chr14:79759397-79759414 (+)	35,301 bp