Rpl18a-ps3 Pseudogene Detail

Summary

• Symbol
  Rpl18a-ps3
• Name
  ribosomal protein L18A, pseudogene 3
• Synonyms
  Gm6830

• Feature Type
  pseudogene
• IDs
  MGI:3648591
  NCBI Gene: 628042
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:67725544-67725714 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648591	pseudogene	Chr6:67725508-67725714 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013526	pseudogene	Chr6:67857955-67858125 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0013479	pseudogene	Chr6:66912193-66912353 (-)
BALB/cJ	MGP_BALBcJ_G0013491	pseudogene	Chr6:65298191-65298351 (-)
C3H/HeJ	MGP_C3HHeJ_G0013446	pseudogene	Chr6:117251488-117251648 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013877	pseudogene	Chr6:69407693-69407863 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013040	pseudogene	Chr6:67153451-67153621 (-)
CBA/J	MGP_CBAJ_G0013308	pseudogene	Chr6:72250829-72250989 (-)
DBA/2J	MGP_DBA2J_G0013392	pseudogene	Chr6:64596826-64596986 (-)
FVB/NJ	MGP_FVBNJ_G0013391	pseudogene	Chr6:64032166-64417156 (-)
LP/J	MGP_LPJ_G0013459	pseudogene	Chr6:67708596-67708766 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013410	pseudogene	Chr6:75999022-76516512 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014800	pseudogene	ChrX:42449942-42450112 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013088	pseudogene	Chr6:67140694-67140854 (-)

Homology

• Gene Tree
  Rpl18a-ps3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000104584 (Evidence)
• NCBI Gene
  628042

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104584	Ensembl Gene Model | MGI Sequence Detail	171	C57BL/6J
transcript	ENSMUST00000198938	Ensembl | MGI Sequence Detail	171	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;