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Gm5417 Pseudogene Detail
Summary
  • Symbol
    Gm5417
  • Name
    predicted gene 5417
  • Feature Type
    pseudogene
  • IDs
    MGI:3648626
    NCBI Gene: 414359
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr15:83289827-83290264 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 39.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    51 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648626
 pseudogene Chr15:83289258-83290365 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0036448
 pseudogene Chr7:15126698-15127202 (+)
AKR/J MGP_AKRJ_G0036398
 pseudogene Chr7:15481150-15481657 (+)
BALB/cJ MGP_BALBcJ_G0036440
 pseudogene Chr7:15354943-15355447 (+)
C3H/HeJ MGP_C3HHeJ_G0036131
 pseudogene Chr7:15805709-15806171 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0034079
 pseudogene ChrX:149660874-149661438 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0036103
 pseudogene Chr7:16776406-16776868 (+)
DBA/2J MGP_DBA2J_G0036279
 pseudogene Chr7:15036888-15037392 (+)
FVB/NJ MGP_FVBNJ_G0036234
 pseudogene Chr7:14996395-14996899 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0036235
 pseudogene Chr7:16680128-16680632 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0037062
 pseudogene Chr7:15260053-15260557 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0034839
 pseudogene Chr7:10132102-10132603 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm5417
  • Find Mice (IMSR)
    9 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    16
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000049414 Ensembl Gene Model | MGI Sequence Detail 438 C57BL/6J ±  kb
transcript ENSMUST00000079706 Ensembl | MGI Sequence Detail 438 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 21
    Phenotypes 17
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory