Gm5885 Pseudogene Detail

Summary

• Symbol
  Gm5885
• Name
  predicted gene 5885

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648672
  NCBI Gene: 545884
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:133506185-133508453 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 64.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648672	pseudogene	Chr6:133506152-133509725 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039843	pseudogene	Chr6:137772561-137776131 (+)
A/J	MGP_AJ_G0039845	pseudogene	Chr6:132103768-132107338 (+)
AKR/J	MGP_AKRJ_G0039772	pseudogene	Chr6:136221507-136225075 (+)
BALB/cJ	MGP_BALBcJ_G0039818	pseudogene	Chr6:131659392-131662961 (+)
C3H/HeJ	MGP_C3HHeJ_G0039472	pseudogene	Chr6:136384867-136388436 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040389	pseudogene	Chr6:141235273-141238848 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036984	pseudogene	Chr6:130838138-130841686 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039441	pseudogene	Chr6:146742210-146745786 (+)
DBA/2J	MGP_DBA2J_G0039642	pseudogene	Chr6:131192266-131195837 (+)
FVB/NJ	MGP_FVBNJ_G0039600	pseudogene	Chr6:130163111-130166681 (+)
LP/J	MGP_LPJ_G0039678	pseudogene	Chr6:137643576-137647143 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039596	pseudogene	Chr6:150614595-150616900 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038257	pseudogene	Chr6:129573218-129575519 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038002	pseudogene	Chr6:134338172-134340480 (+)
WSB/EiJ	MGP_WSBEiJ_G0038811	pseudogene	Chr6:136509999-136512302 (+)

Homology

• Gene Tree
  Gm5885
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000095412 (Evidence)
• NCBI Gene
  545884

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095412	Ensembl Gene Model | MGI Sequence Detail	2269	C57BL/6J
transcript	ENSMUST00000203357	Ensembl | MGI Sequence Detail	528	Not Applicable
polypeptide	NP_001171969	RefSeq | MGI Sequence Detail	174	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;