Gm5886 Pseudogene Detail

Summary

• Symbol
  Gm5886
• Name
  predicted gene 5886

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648674
  NCBI Gene: 545886
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:133742259-133744366 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 64.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  285 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648674	pseudogene	Chr6:133740961-133744371 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039844	pseudogene	Chr6:138004985-138008389 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040390	pseudogene	Chr6:141770275-141773680 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038579	pseudogene	Chr6:135880508-135882659 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0039601	pseudogene	Chr6:130390778-130394185 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039597	pseudogene	Chr6:151045039-151153861 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040489	pseudogene	Chr6:136395146-136398552 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038001	pseudogene	Chr6:134267105-134272944 (-)
WSB/EiJ	MGP_WSBEiJ_G0038812	pseudogene	Chr6:136837655-136996029 (-)

Homology

• Gene Tree
  Gm5886
  

Expression

• Assay Results
  706
• cDNA Data
  164

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000108106 (Evidence)
• NCBI Gene
  545886

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108106	Ensembl Gene Model | MGI Sequence Detail	2108	C57BL/6J
transcript	ENSMUST00000203957	Ensembl | MGI Sequence Detail	522	Not Applicable
polypeptide	NP_001171123	RefSeq | MGI Sequence Detail	165	FVB/N

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR026086 Proline-rich protein

Molecular
Reagents

• All nucleic 164

  cDNA 164

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm5886:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63707	Chr6:133744372-133744377 (-)	-9 bp