Gm9403 Pseudogene Detail

Summary

• Symbol
  Gm9403
• Name
  predicted gene 9403

• Feature Type
  pseudogene
• IDs
  MGI:3648825
  NCBI Gene: 668858
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:132548157-132550337 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 61.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648825	pseudogene	Chr3:132548066-132550740 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012418	pseudogene	Chr3:135625811-135627977 (+)
A/J	MGP_AJ_G0012413	pseudogene	Chr3:130840706-130842924 (+)
AKR/J	MGP_AKRJ_G0012377	pseudogene	Chr3:134252517-134259455 (+)
BALB/cJ	MGP_BALBcJ_G0012394	pseudogene	Chr3:130671208-130673392 (+)
C3H/HeJ	MGP_C3HHeJ_G0012258	pseudogene	Chr3:134643761-134650200 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012708	pseudogene	Chr3:140384132-140386314 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011071	pseudogene	Chr3:126272485-126274639 (+)
CAST/EiJ	MGP_CASTEiJ_G0012025	pseudogene	Chr3:134395452-134397648 (+)
CBA/J	MGP_CBAJ_G0012236	pseudogene	Chr3:145123698-145127978 (+)
DBA/2J	MGP_DBA2J_G0012292	pseudogene	Chr3:130005876-130008073 (+)
FVB/NJ	MGP_FVBNJ_G0012294	pseudogene	Chr3:127581306-127583503 (+)
LP/J	MGP_LPJ_G0012364	pseudogene	Chr3:137104789-137106993 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012300	pseudogene	Chr3:153092339-153094542 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012711	pseudogene	Chr3:133922252-133924353 (+)
PWK/PhJ	MGP_PWKPhJ_G0011864	pseudogene	Chr3:129772803-129774936 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011682	pseudogene	Chr3:131991319-131993405 (+)
WSB/EiJ	MGP_WSBEiJ_G0012052	pseudogene	Chr3:134681834-134683945 (+)

Homology

• Gene Tree
  Gm9403
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9403
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000106499 (Evidence)
• NCBI Gene
  668858

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106499	Ensembl Gene Model | MGI Sequence Detail	2181	C57BL/6J
transcript	ENSMUST00000196299	Ensembl | MGI Sequence Detail	2181	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9403:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31764	Chr3:132548857-132548890 (+)	717 bp