Gm9402 Pseudogene Detail

Summary

• Symbol
  Gm9402
• Name
  predicted gene 9402

• Feature Type
  pseudogene
• IDs
  MGI:3648832
  NCBI Gene: 668857
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:132361156-132361543 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 61.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648832	pseudogene	Chr3:132360879-132361558 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012417	pseudogene	Chr3:135429618-135430005 (-)
A/J	MGP_AJ_G0012412	pseudogene	Chr3:130653317-130653704 (-)
AKR/J	MGP_AKRJ_G0012376	pseudogene	Chr3:134057025-134057412 (-)
BALB/cJ	MGP_BALBcJ_G0012393	pseudogene	Chr3:130485142-130485529 (-)
C3H/HeJ	MGP_C3HHeJ_G0012257	pseudogene	Chr3:134458684-134459071 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012707	pseudogene	Chr3:140186034-140186421 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009881	pseudogene	Chr13:67091221-67091591 (-)
CAST/EiJ	MGP_CASTEiJ_G0012024	pseudogene	Chr3:134198053-134198440 (-)
CBA/J	MGP_CBAJ_G0012235	pseudogene	Chr3:144922420-144922807 (-)
DBA/2J	MGP_DBA2J_G0012291	pseudogene	Chr3:129825355-129825742 (-)
FVB/NJ	MGP_FVBNJ_G0012293	pseudogene	Chr3:127400482-127400869 (-)
LP/J	MGP_LPJ_G0012363	pseudogene	Chr3:136912133-136912520 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012299	pseudogene	Chr3:152886692-152887079 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012710	pseudogene	Chr3:133731175-133731562 (-)
PWK/PhJ	MGP_PWKPhJ_G0011863	pseudogene	Chr3:129585218-129585604 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011681	pseudogene	Chr3:131805673-131806060 (-)
WSB/EiJ	MGP_WSBEiJ_G0012051	pseudogene	Chr3:134494066-134494453 (-)

Homology

• Gene Tree
  Gm9402
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9402
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106313 (Evidence)
• NCBI Gene
  668857

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106313	Ensembl Gene Model | MGI Sequence Detail	388	C57BL/6J
transcript	ENSMUST00000196849	Ensembl | MGI Sequence Detail	388	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9402:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35731	Chr3:132361560-132361572 (-)	-23 bp